_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-65
 Query name: gi|929053001|ref|XP_014046541.1| PREDICTED: glutathione peroxidase 2 [Salmo salar]
 Query range: 1-191  (total 191)

 Target: /data/www-rg/seblastian_results/363494796/tempfiles/temptarget.fasta
 Chromosome: CM007953.1:subseq_40334258,100714_ Strand: -
 Positions:
 -Exon 1  50493        50714
 -Exon 2  49994        50344

 Redox box: no

Query   MTFIAKTFYDLKATTLEGNSVDFNVFRGRVVLIENVASLUGTTTRDYSQLNLLQSKYPHRLVVLGFPCNQFGYQ <---Intron---> ENCSNGEILN
        | ||||||||||||||||/||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   148bp    > ||||||||||
Target  MAFIAKTFYDLKATTLEGDSVDFNVFRGRVVLIENVASLUGTTTRDYSQLNLLQSKYPHRLVVLGFPCNQFGYQ                ENCSNGEILN
        agtagaattgcagaacgggtggtagtcgcggcagaggtctgaaacgtaccatccaatccccggcgtctactgtc                gattaggaca
        tcttcactaataccctagactatattgggttttaatcctggcccgaagatattagaacagttttgtcgaatgaa                aagcagatta
        ggccggccttggcgcgggtaatctgtagggcctgtgagcagaccgcccgccgcgcgctcgagcgcccctgtccg                gctatggcgc
                                               *                                                            

Query   SLKYVRPGDGYQPGFTVFEKCDVNGTNTHPVFAYLKDKLPYPDDDPHTLIQDPKFLIWSPISRTDISWNFEKFLVGPEGEPFKRYSKIFETINIEPDIQR
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Target  SLKYVRPGDGYQPGFTVFEKCDVNGTNTHPVFAYLKDKLPYPDDDPHTLIQDPKFLIWSPISRTDISWNFEKFLVGPEGEPFKRYSKKFETINIEPDIQR
        ttatgccgggtccgtagtgatggagaaaccgtgttagacctcgggccacacgcatcatacaaaagattatgatcggcgggctactaaatgaaaagcgaca
        ctaatgcgagaacgtcttaagatagcacacttcataaatcacaaacacttaacatttggctggcatcgataatttgcagactagagaatactatacatag
        aagtgtaatccgtcctctagttgtacccctctctgacatctttttaccccgttacccgtcccgacctgttgacgtgagagctatccaatgtcccgtctaa
                                                                                                            

Query   LLRLTKT
        |||||||
Target  LLRLTKT
        ctacaaa
        ttgtcac
        ggaacgc
               
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 99 ; UGA-SECIS: 552

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM007953.1:subseq_40334258,100714_ Strand = - Positions = 49894 - 49816
 Found by:  Infernal (score=15.06) Covels (score=20.48)
 Stem2 length = 10   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -18.45

         ..(((((((..........(((((((((((((((...............))))))))))))))).............)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu----u-uuucaugaccggc
         .(((((((((.........([[(({(((((((((.....-..-----..)))))))))}))]]).........-..))))))))).
 target  CCUUUUGAGUUUUACUAAAUGAGGUUAAUAUUCUAAAAA-CU-----UGGGAGUAUUAUCUGAGGCCAUGUAA-AUGCUCAAGAGU
                            ****           ^^^                       ****